1MDY

CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES ON DNA RECOGNITION AND IMPLICATIONS FOR TRANSCRIPTIONAL ACTIVATION

Structural Biology Knowledgebase: 1MDY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.253

Literature

Macromolecules
Sequence Display for 1MDY

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 46986.01


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (MYOD BHLH DOMAIN) A 68 Mus musculus Gene Name(s): Myod1 Myod
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (MYOD BHLH DOMAIN) B, C, D 62 Mus musculus Gene Name(s): Myod1 Myod
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*CP*AP*AP*CP*AP*GP*CP*TP*GP*TP*TP*GP*A)-3') E, F, G, H 14 synthetic


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.253
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 222.80 α = 90.00
b = 70.80 β = 90.00
c = 30.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-06-09
  • Released Date: 1994-08-31
  • Deposition author(s): Ma, P.C.M., Rould, M.A., Weintraub, H., Pabo, C.O.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4