1MDV

KEY ROLE OF PHENYLALANINE 20 IN CYTOCHROME C3: STRUCTURE, STABILITY AND FUNCTION STUDIES

Structural Biology Knowledgebase: 1MDV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1MDV

Classification: ELECTRON TRANSPORT

Total Structure Weight: 28239.00

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME C3 A, B 107 Desulfovibrio vulgaris Mutation: F20L
Gene Name(s): DVU_3171
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.224
  • Space Group: P 4
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.22 α = 90.00
b = 97.22 β = 90.00
c = 36.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-09-08
  • Released Date: 1999-05-04
  • Deposition author(s): Dolla, A., Arnoux, P., Protasevich, I., Lobachov, V., Brugna, M., Guidici-Orticoni, M.T., Haser, R., Czjzek, M., Makarov, A., Brushi, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values