1M67

Crystal Structure of Leishmania mexicana GPDH Complexed with Inhibitor 2-bromo-6-hydroxy-purine

Structural Biology Knowledgebase: 1M67 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.244

Literature

Macromolecules
Sequence Display for 1M67

Classification: OXIDOREDUCTASE

Total Structure Weight: 39789.57

Macromolecule Entities
Molecule Chains Length Organism Details
Glycerol-3-phosphate dehydrogenase A 366 Leishmania mexicana EC#: 1.1.1.8 IUBMB
Gene Name(s): GPD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLM
Query on PLM

A PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOA
Query on BOA

A 2-BROMO-6-HYDROXY-PURINE
C5 H3 Br N4 O
ONXCBJOMYNPZNI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.244
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.50 α = 90.00
b = 70.50 β = 90.00
c = 211.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-12
  • Released Date: 2002-12-11
  • Deposition author(s): Choe, J., Suresh, S., Wisedchaisri, G., Kennedy, K.J., Gelb, M.H., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values