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Transition State Stabilization by a Catalytic RNA
DOI:10.2210/pdb1m5p/pdb   NDB ID: PR0076
1M5P
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Translation/rna
    Structure Weight: 96646.32
    Molecule: RNA INHIBITOR SUBSTRATE
    Polymer: 1 Type: rna Length: 12
    Chains: A, D
    Details: first fragment
    Molecule: RNA INHIBITOR SUBSTRATE
    Polymer: 2 Type: rna Length: 9
    Chains: M, P
    Details: second fragment
    Molecule: RNA HAIRPIN RIBOZYME
    Polymer: 3 Type: rna Length: 92
    Chains: B, E
    Molecule: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A
    Polymer: 4 Type: protein Length: 100
    Chains: C, F
    Fragment: U1A RNA BINDING DOMAIN
    Mutation: Y31H,Q36R
    Organism: Homo sapiens
    Gene Name: Gene View for SNRPA
    UniProtKB: Protein Feature View | Search PDB | P09012  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1M5K  The same ribozyme with different substrate 
    1M5O  The same ribozyme with different substrate 
    1M5V  The same ribozyme with different substrate 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5CG
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    5CG C10 H12 Cl N5 O4 DG rnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PR0076
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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