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Transition State Stabilization by a Catalytic RNA
 
 
DOI:10.2210/pdb1m5p/pdb   NDB ID: PR0076
1M5P
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Translation/rna
    Structure Weight: 96646.32
     
    Molecule:RNA INHIBITOR SUBSTRATE
    Polymer:1Type:polyribonucleotideLength:12
    Chains:A, D
    Other Details:first fragment
    Molecule:RNA INHIBITOR SUBSTRATE
    Polymer:2Type:polyribonucleotideLength:9
    Chains:M, P
    Other Details:second fragment
    Molecule:RNA HAIRPIN RIBOZYME
    Polymer:3Type:polyribonucleotideLength:92
    Chains:B, E
    Molecule:U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A
    Polymer:4Type:polypeptide(L)Length:100
    Chains:C, F
    Fragment:U1A RNA BINDING DOMAIN
    Mutation:Y31H,Q36R
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 3
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
    Polymer: 4
    Scientific Name: Homo sapiens Go to NCBI Taxonomy entry Common Name: Human Expression System: Escherichia coli  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1M5K  The same ribozyme with different substrate 
    1M5O  The same ribozyme with different substrate 
    1M5V  The same ribozyme with different substrate 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    CA     CALCIUM ION Ca 3DLigand Explorer Link out to Ligand Expos:CA Link out to SuperLigands:CA Link out to SuperHapten:CA
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    5CG 5'-CHLORO-5'-DEOXY-GUANOSINE (parent: DG)(type: dnaLinking) C10 H12 Cl N5 O4 3D Ligand Explorer Link out to Ligand Expos:5CG Link out to SuperLigands:5CG Link out to SuperHapten:5CG 2D
     
     
  •  
    Move Section Derived Data Hide
     
     
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< Biological Assembly 1    Help >
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Biological assembly 1 assigned by authors
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Rupert, P.B.,   Massey, A.,   Sigurdsson, S.T.,   Ferre-D`Amare, A.R.

    Deposition:   2002-07-09
    Release:   2002-10-12
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.60
    R-Value: 0.223 (obs.)
    R-Free: 0.280
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 259.80 α = 90.00 
    b = 44.30 β = 107.00 
    c = 102.40 γ = 90.00