1M15

Transition state structure of arginine kinase

Structural Biology Knowledgebase: 1M15 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.140
  • R-Value Work: 0.125

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1M15

Classification: TRANSFERASE

Total Structure Weight: 41000.85

Macromolecule Entities
Molecule Chains Length Organism Details
arginine kinase A 357 Limulus polyphemus EC#: 2.7.3.3 IUBMB
Mutation: E103Q, D112G, G116A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ARG
Query on ARG

A ARGININE
C6 H15 N4 O2
ODKSFYDXXFIFQN-BYPYZUCNSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

A NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.2 Å
  • R-Value Free: 0.140
  • R-Value Work: 0.125
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 65.39 α = 90.00
b = 70.31 β = 90.00
c = 80.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-17
  • Released Date: 2002-12-04
  • Deposition author(s): Yousef, M.S., Fabiola, F., Gattis, J.L., Somasundaram, T., Chapman, M.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4