1M0M

BACTERIORHODOPSIN M1 INTERMEDIATE AT 1.43 A RESOLUTION

Structural Biology Knowledgebase: 1M0M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.163

Literature

Macromolecules
Sequence Display for 1M0M

Classification: ION TRANSPORT

Total Structure Weight: 37244.27

Macromolecule Entities
Molecule Chains Length Organism Details
BACTERIORHODOPSIN A 262 Halobacterium salinarum Gene Name(s): bop VNG_1467G
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Bacterial and Algal Rhodopsins

Protein Name: Bacteriorhodopsin (BR)


Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LI1
Query on LI1

A 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]- 2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL
LIPID FRAGMENT (Synonym)
C42 H86 O3
YERVUJAKCNBGCR-BIHSMRAKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SQU
Query on SQU

A 2,10,23-TRIMETHYL-TETRACOSANE
LIPID FRAGMENT (Synonym)
C27 H56
ZADHKSJXSZBQFB-HHHXNRCGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.43 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.163
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 61.07 α = 90.00
b = 61.07 β = 90.00
c = 110.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-13
  • Released Date: 2002-09-11
  • Deposition author(s): Lanyi, J.K.

Revision History

  • 2015-09-09
    Type: Version format compliance | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4