1LVC

Crystal structure of the adenylyl cyclase domain of anthrax edema factor (EF) in complex with calmodulin and 2' deoxy, 3' anthraniloyl ATP

Structural Biology Knowledgebase: 1LVC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.307
  • R-Value Work: 0.281

Literature

Macromolecules
Sequence Display for 1LVC

Classification: LYASE

Total Structure Weight: 228972.06

Macromolecule Entities
Molecule Chains Length Organism Details
calmodulin-sensitive adenylate cyclase A, B, C 510 Bacillus anthracis EC#: 4.6.1.1 IUBMB
Fragment: c-terminal domain (residues 291-800)
Gene Name(s): cya pXO1-122 BXA0141 GBAA_pXO1_0142
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
calmodulin D, E, F 149 Homo sapiens Gene Name(s): CALM1 Gene View CALM CAM CAM1 CALM2 Gene View CAM2 CAMB CALM3 Gene View CALML2 CAM3 CAMC CAMIII
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DOT
Query on DOT

A, C 3'ANTHRANILOYL-2'-DEOXY-ADENOSINE-5'-TRIPHOSPHATE
C17 H21 N6 O13 P3
FIWKNPONGIOEHC-YNEHKIRRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
YB
Query on YB

A, B, C YTTERBIUM (III) ION
Yb
AWSFICBXMUKWSK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

D, E, F CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DOT N/A in BindingDB
N/A in BindingMoad
Kd: 1000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Free: 0.307
  • R-Value Work: 0.281
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 116.92 α = 90.00
b = 167.92 β = 90.00
c = 341.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-28
  • Released Date: 2002-12-04
  • Deposition author(s): Shen, Y., Lee, Y.-S., Soelaiman, S., Bergson, P., Lu, D., Chen, A., Beckingham, K., Grabarek, Z., Mrksich, M., Tang, W.-J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4