1LSH

LIPID-PROTEIN INTERACTIONS IN LIPOVITELLIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1LSH

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 179300.36

Macromolecule Entities
Molecule Chains Length Organism Details
LIPOVITELLIN (LV-1N, LV-1C) A 1056 Ichthyomyzon unicuspis Fragment: LV1n, LV1c
Mutation: A88G, Y396A, H417N, D469K, R782G, H834S, ΔQ839, H1013S, Q1064T
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LIPOVITELLIN (LV-2) B 319 Ichthyomyzon unicuspis Fragment: LV2
Mutation: K1473G, K1489A
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLD
Query on PLD

A, B DIUNDECYL PHOSPHATIDYL CHOLINE
C50 H101 N O8 P
QFFSGJSMHPWZOB-QSCHNALKSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UPL
Query on UPL

A, B UNKNOWN BRANCHED FRAGMENT OF PHOSPHOLIPID
UNKNOWN PHOSPHOLIPID FRAGMENT (Synonym)
C34 H70
QPCSNFPFMCVVAI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.193
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 190.17 α = 90.00
b = 84.52 β = 100.39
c = 89.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-17
  • Released Date: 2002-07-31
  • Deposition author(s): Thompson, J.R., Banaszak, L.J.

Revision History

  • Version 1_0: 2002-07-31

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance