1LKP

Crystal structure of Desulfovibrio vulgaris rubrerythrin all-iron(II) form, azide adduct


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1LKP

Classification: ELECTRON TRANSPORT

Total Structure Weight: 21828.86

Macromolecule Entities
Molecule Chains Length Organism Details
Rubrerythrin A 191 Desulfovibrio vulgaris Details: all-iron (II) form
Gene Name(s): rbr DVU_3094
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AZI
Query on AZI

A AZIDE ION
N3
IVRMZWNICZWHMI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.178
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 48.34 α = 90.00
b = 80.09 β = 90.00
c = 100.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-25
  • Released Date: 2002-09-18
  • Deposition author(s): Jin, S., Kurtz Jr., D.M., Liu, Z.J., Rose, J., Wang, B.C.

Revision History

  • Version 1_0: 2002-09-18

    Type: Initial release

  • Version 1_1: 2008-04-28

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance