1LHN

CRYSTAL STRUCTURE OF THE N-TERMINAL LG-DOMAIN OF SHBG IN COMPLEX WITH 5ALPHA-ANDROSTANE-3BETA,17ALPHA-DIOL

Structural Biology Knowledgebase: 1LHN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1LHN

Classification: TRANSPORT PROTEIN

Total Structure Weight: 21370.91

Macromolecule Entities
Molecule Chains Length Organism Details
SEX HORMONE-BINDING GLOBULIN A 189 Homo sapiens Fragment: LG-like 1 domain, Residues 30-218
Gene Name(s): SHBG Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AON
Query on AON

A 5-ALPHA-ANDROSTANE-3-BETA,17-ALPHA-DIOL
C19 H32 O2
CBMYJHIOYJEBSB-MFXFBURESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.198
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.90 α = 90.00
b = 103.90 β = 90.00
c = 84.48 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-17
  • Released Date: 2002-10-23
  • Deposition author(s): Grishkovskaya, I., Avvakumov, G.V., Hammond, G.L., Catalano, M.G., Muller, Y.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4