1LH0

Crystal Structure of Salmonella typhimurium OMP Synthase in Complex with MGPRPP and Orotate

Structural Biology Knowledgebase: 1LH0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1LH0

Classification: TRANSFERASE

Total Structure Weight: 47910.87

Macromolecule Entities
Molecule Chains Length Organism Details
OMP synthase A, B 213 Salmonella enterica EC#: 2.4.2.10 IUBMB
Gene Name(s): pyrE STM3733
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PRP
Query on PRP

B ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID
C5 H13 O14 P3
PQGCEDQWHSBAJP-TXICZTDVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ORO
Query on ORO

A, B OROTIC ACID
C5 H4 N2 O4
PXQPEWDEAKTCGB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.205
  • Space Group: C 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 105.57 α = 90.00
b = 154.23 β = 90.00
c = 52.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-16
  • Released Date: 2002-05-08
  • Deposition author(s): Fedorov, A.A., Panneerselvam, K., Shi, W., Grubmeyer, C., Almo, S.C.

Revision History

  • 2012-10-17
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4