1LEI

The kB DNA sequence from the HLV-LTR functions as an allosteric regulator of HIV transcription

Structural Biology Knowledgebase: 1LEI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.250

Literature

Macromolecules
Sequence Display for 1LEI

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 77033.18


Macromolecule Entities
Molecule Chains Length Organism Details
NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT A 274 Mus musculus Fragment: p65 RHR
Gene Name(s): Rela Nfkb3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT B 313 Mus musculus Fragment: p50 RHR
Gene Name(s): Nfkb1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*TP*CP*AP*GP*GP*GP*AP*AP*AP*GP*TP*AP*CP*AP*GP*A)-3' C 17 synthetic kB DNA
5'-D(*TP*CP*TP*GP*5ITP*AP*CP*5ITP*5ITP*5ITP*CP*CP*CP*TP*GP*AP*G)-3' D 17 synthetic kB DNA

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5IU
Query on 5IU
D DNA LINKING C9 H12 I N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.250
  • Space Group: C 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 137.13 α = 90.00
b = 179.70 β = 90.00
c = 97.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-04-09
  • Released Date: 2003-04-15
  • Deposition author(s): Chen-Park, F., Huang, D.B., Ghosh, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4