1L9D

Role of Histidine 269 in Catalysis by Monomeric Sarcosine Oxidase

Structural Biology Knowledgebase: 1L9D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 1L9D

Classification: OXIDOREDUCTASE

Total Structure Weight: 88017.74

Macromolecule Entities
Molecule Chains Length Organism Details
Monomeric sarcosine oxidase A, B 389 Bacillus sp. b-0618 EC#: 1.5.3.1 IUBMB
Mutation: H269N
Gene Name(s): soxA sox
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PYC
Query on PYC

A, B PYRROLE-2-CARBOXYLATE
C5 H4 N O2
WRHZVMBBRYBTKZ-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.171
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.41 α = 90.00
b = 69.77 β = 92.22
c = 73.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-22
  • Released Date: 2002-08-30
  • Deposition author(s): Zhao, G., Song, H., Chen, Z.-w., Mathews, F.S., Jorns, M.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name