1L6J

Crystal structure of human matrix metalloproteinase MMP9 (gelatinase B).


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 1L6J

Classification: HYDROLASE

Total Structure Weight: 47595.93

Macromolecule Entities
Molecule Chains Length Organism Details
Matrix metalloproteinase-9 A 425 Homo sapiens EC#: 3.4.24.35 IUBMB
Fragment: pro-form with C-terminal domain truncated
Gene Name(s): MMP9 Gene View CLG4B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.187
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 123.68 α = 90.00
b = 123.68 β = 90.00
c = 89.94 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-11
  • Released Date: 2002-07-03
  • Deposition author(s): Elkins, P.A., Ho, Y.S., Smith, W.W., Janson, C.A., D'Alessio, K.J., McQueney, M.S., Cummings, M.D., Romanic, A.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4