1L2B

MutM (Fpg) DNA End-Product Structure

Structural Biology Knowledgebase: 1L2B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1L2B

Classification: HYDROLASE / DNA

Total Structure Weight: 40309.36


Macromolecule Entities
Molecule Chains Length Organism Details
MutM A 274 Geobacillus stearothermophilus EC#: 3.2.2.23 IUBMB
Gene Name(s): mutM fpg
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3' B 16 synthetic
5'-D(*TP*GP*CP*GP*TP*CP*C*(AD2))-3' C 8 synthetic
5'-D(P*GP*TP*CP*TP*AP*CP*C)-3' D 7 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
AD2
Query on AD2
C DNA LINKING C10 H15 N5 O9 P2 DA

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.209
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.18 α = 90.00
b = 94.52 β = 90.00
c = 105.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-02-20
  • Released Date: 2002-06-14
  • Deposition author(s): Fromme, J.C., Verdine, G.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4