1KN2

CATALYTIC ANTIBODY D2.3 COMPLEX

Structural Biology Knowledgebase: 1KN2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 1KN2

Classification: IMMUNE SYSTEM

Total Structure Weight: 49027.30

Macromolecule Entities
Molecule Chains Length Organism Details
IG ANTIBODY D2.3 (LIGHT CHAIN) L 219 Mus musculus Gene Name(s): Igk
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
IG ANTIBODY D2.3 (HEAVY CHAIN) H 222 Mus musculus

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PNE
Query on PNE

L PARA-NITROPHENYL PHOSPHONOBUTANOYL L-ALANINE
C13 H17 N2 O8 P
KBXXIYHMPQZHCH-SECBINFHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.213
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 78.28 α = 90.00
b = 78.28 β = 90.00
c = 158.95 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-12-18
  • Released Date: 2002-03-13
  • Deposition author(s): Gigant, B., Knossow, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4