1KBL

PYRUVATE PHOSPHATE DIKINASE

Structural Biology Knowledgebase: 1KBL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1KBL

Classification: TRANSFERASE

Total Structure Weight: 97139.13

Macromolecule Entities
Molecule Chains Length Organism Details
PYRUVATE PHOSPHATE DIKINASE A 873 [clostridium] symbiosum EC#: 2.7.9.1 IUBMB
Gene Name(s): ppdK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NH4
Query on NH4

A AMMONIUM ION
H4 N
QGZKDVFQNNGYKY-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.195
  • Space Group: P 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.84 α = 90.00
b = 58.84 β = 94.84
c = 102.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-06
  • Released Date: 2002-01-30
  • Deposition author(s): Herzberg, O., Chen, C.C., Liu, S.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4