1K9I

Complex of DC-SIGN and GlcNAc2Man3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 1K9I

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 184293.36

Macromolecule Entities
Molecule Chains Length Organism Details
mDC-SIGN1B type I isoform A, B, C..., D, E, F, G, H, I, JA, B, C, D, E, F, G, H, I, J 156 Homo sapiens Fragment: Carbohydrate recognition domain
Gene Name(s): CD209 Gene View CLEC4L
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C, D, E, H N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A, C, D, E, H ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D, E, F, G, H, I, J CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.213
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 106.81 α = 90.00
b = 148.16 β = 91.03
c = 112.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-29
  • Released Date: 2001-12-21
  • Deposition author(s): Feinberg, H., Mitchell, D.A., Drickamer, K., Weis, W.I.

Revision History

  • 2007-10-16
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance