1K6M

Crystal Structure of Human Liver 6-Phosphofructo-2-Kinase/Fructose-2,6-Bisphosphatase

Structural Biology Knowledgebase: 1K6M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1K6M

Classification: Transferase Hydrolase

Total Structure Weight: 101817.49

Macromolecule Entities
Molecule Chains Length Organism Details
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2-phosphatase A, B 432 Homo sapiens EC#: 2.7.1.105 IUBMB 3.1.3.46 IUBMB
Mutation: W67F, W301F, W322F, D409E
Gene Name(s): PFKFB1 Gene View F6PK PFRX
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AGS
Query on AGS

A, B PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); ADENOSINE 5'- (GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE (Synonym)
C10 H16 N5 O12 P3 S
NLTUCYMLOPLUHL-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.217
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.98 α = 90.00
b = 185.33 β = 90.70
c = 89.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-10-16
  • Released Date: 2002-12-11
  • Deposition author(s): Lee, Y.H., Li, Y., Uyeda, K., Hasemann, C.A.

Revision History

  • 2012-03-07
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4