1JVZ

Structure of cephalosporin acylase in complex with glutaryl-7-aminocephalosporanic acid

Structural Biology Knowledgebase: 1JVZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1JVZ

Classification: HYDROLASE

Total Structure Weight: 76545.66

Macromolecule Entities
Molecule Chains Length Organism Details
cephalosporin acylase alpha chain A 158 Brevundimonas diminuta EC#: 3.5.1.93 IUBMB
Fragment: RESIDUES 30-187
Mutation: M145M
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
cephalosporin acylase beta chain B 520 Brevundimonas diminuta EC#: 3.5.1.93 IUBMB
Fragment: RESIDUES 199-718
Mutation: M233M, M242M, M318M, M325M, M338M, M341M, T426C, R428A, D429N, M451M, M463M, M473M, E506D, M585M, M629M, M642M
Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CEN
Query on CEN

B 7BETA-(4CARBOXYBUTANAMIDO) CEPHALOSPORANIC ACID
GLUTARYL 7-AMINO CEPHALOSPORANIC ACID (Synonym)
C15 H18 N2 O8 S
IXUSDMGLUJZNFO-BXUZGUMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.190
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 74.14 α = 90.00
b = 74.14 β = 90.00
c = 379.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-01
  • Released Date: 2002-09-01
  • Deposition author(s): Kim, Y., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4