1JVL

Azurin dimer, covalently crosslinked through bis-maleimidomethylether


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1JVL

Classification: ELECTRON TRANSPORT

Total Structure Weight: 28626.81

Macromolecule Entities
Molecule Chains Length Organism Details
Azurin A, B 128 Pseudomonas aeruginosa Fragment: Azurin
Mutation: N42C
Gene Name(s): azu PA4922
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OPP
Query on OPP

B 1-[PYRROL-1-YL-2,5-DIONE-METHOXYMETHYL]-PYRROLE- 2,5-DIONE
C10 H8 N2 O5
UTRLJOWPWILGSB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
144
Query on 144

A, B TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
C4 H12 N O3
DRDCQJADRSJFFD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A, B COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A, B NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.190
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 48.60 α = 90.00
b = 48.60 β = 90.00
c = 284.81 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-30
  • Released Date: 2002-01-04
  • Deposition author(s): van Amsterdam, I.M.C., Ubbink, M., Einsle, O., Messerschmidt, A., Merli, A., Cavazzini, D., Rossi, G.L., Canters, G.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4