1JV6

BACTERIORHODOPSIN D85S/F219L DOUBLE MUTANT AT 2.00 ANGSTROM RESOLUTION

Structural Biology Knowledgebase: 1JV6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 1JV6

Classification: ION TRANSPORT

Total Structure Weight: 32265.21

Macromolecule Entities
Molecule Chains Length Organism Details
Bacteriorhodopsin A 249 Halobacterium salinarum Mutation: D85S, F219L
Gene Name(s): bop VNG_1467G
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: Bacterial and Algal Rhodopsins

Protein Name: Bacteriorhodopsin (BR)


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LI1
Query on LI1

A 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]- 2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL
LIPID FRAGMENT (Synonym)
C42 H86 O3
YERVUJAKCNBGCR-BIHSMRAKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.222
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 51.80 α = 90.00
b = 121.30 β = 90.00
c = 85.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-28
  • Released Date: 2001-10-31
  • Deposition author(s): Rouhani, S., Cartailler, J.-P., Facciotti, M.T., Walian, P., Needleman, R., Lanyi, J.K., Glaeser, R.M., Luecke, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4