1JV3

CRYSTAL STRUCTURE OF HUMAN AGX1 COMPLEXED WITH UDPGALNAC

Structural Biology Knowledgebase: 1JV3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1JV3

Classification: TRANSFERASE

Total Structure Weight: 115408.04

Macromolecule Entities
Molecule Chains Length Organism Details
GlcNAc1P uridyltransferase isoform 1: AGX1 A, B 505 Homo sapiens EC#: 2.7.7 IUBMB
Mutation: S445G
Gene Name(s): UAP1 Gene View SPAG2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UD2
Query on UD2

A, B URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE
3R, (Synonym)
C17 H27 N3 O17 P2
LFTYTUAZOPRMMI-NESSUJCYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.190
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 85.74 α = 90.00
b = 70.77 β = 95.26
c = 95.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-28
  • Released Date: 2002-08-28
  • Deposition author(s): Peneff, C., Bourne, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4