1JRQ

X-ray Structure Analysis of the Role of the Conserved Tyrosine-369 in Active Site of E. coli Amine Oxidase

Structural Biology Knowledgebase: 1JRQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1JRQ

Classification: OXIDOREDUCTASE

Total Structure Weight: 162990.34

Macromolecule Entities
Molecule Chains Length Organism Details
Copper amine oxidase A, B 727 Escherichia coli EC#: 1.4.3.21 IUBMB
Mutation: Y369F, Y466X
Gene Name(s): tynA maoA b1386 JW1381
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CU
Query on CU

A, B COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPQ
Query on TPQ
A, B L-PEPTIDE LINKING C9 H9 N O5 TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.195
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 134.54 α = 90.00
b = 166.45 β = 90.00
c = 79.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-14
  • Released Date: 2001-11-21
  • Deposition author(s): Murray, J.M., Kurtis, C.R., Tambarajah, W., Saysell, C.G., Wilmot, C.M., Parsons, M.R., Phillips, S.E.V., Knowles, P.F., McPherson, M.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4