1JMX

crystal structure of a quinohemoprotein amine dehydrogenase from pseudomonas putida

Structural Biology Knowledgebase: 1JMX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1JMX

Classification: OXIDOREDUCTASE

Total Structure Weight: 103198.59

Macromolecule Entities
Molecule Chains Length Organism Details
Amine Dehydrogenase A 494 Pseudomonas putida Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Amine Dehydrogenase B 349 Pseudomonas putida Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Amine Dehydrogenase G 79 Pseudomonas putida EC#: 1.4.99 IUBMB
Gene Name(s): qhnDH
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEC
Query on HEC

A HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TRQ
Query on TRQ
G L-PEPTIDE LINKING C11 H10 N2 O4 TRP

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.209
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 167.21 α = 90.00
b = 92.37 β = 112.00
c = 79.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-20
  • Released Date: 2002-01-16
  • Deposition author(s): Satoh, A., Miyahara, I., Hirotsu, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4