1JMK

Structural Basis for the Cyclization of the Lipopeptide Antibiotic Surfactin by the Thioesterase Domain SrfTE

Structural Biology Knowledgebase: 1JMK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 1JMK

Classification: HYDROLASE

Total Structure Weight: 51578.10

Macromolecule Entities
Molecule Chains Length Organism Details
Surfactin Synthetase C, O 230 Bacillus subtilis Fragment: Thioesterase Domain
Gene Name(s): srfAC srfA3 BSU03510
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

C, O SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.71 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.230
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 63.01 α = 90.00
b = 76.37 β = 90.00
c = 119.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-18
  • Released Date: 2002-03-27
  • Deposition author(s): Bruner, S.D., Weber, T., Kohli, R.M., Schwarzer, D., Marahiel, M.A., Walsh, C.T., Stubbs, M.T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4