1JL6

Crystal Structure of CN-Ligated Component IV Glycera Dibranchiata Monomeric Hemoglobin

Structural Biology Knowledgebase: 1JL6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 1JL6

Classification: OXYGEN STORAGE / TRANSPORT

Total Structure Weight: 15691.70

Macromolecule Entities
Molecule Chains Length Organism Details
monomer hemoglobin component IV A 147 Glycera dibranchiata Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CYN
Query on CYN

A CYANIDE ION
C N
XFXPMWWXUTWYJX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.179
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 61.01 α = 90.00
b = 32.89 β = 109.07
c = 40.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-16
  • Released Date: 2002-07-16
  • Deposition author(s): Park, H.J., Yang, C., Treff, N., Satterlee, J.D., Kang, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4