1JJK

Selenomethionine Substitution of Orotidine-5'-monophosphate Decarboxylase from E. coli Causes a Change in Crystal Contacts and Space Group


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.344
  • R-Value Work: 0.344

Literature

Macromolecules
Sequence Display for 1JJK

Classification: LYASE

Total Structure Weight: 434247.38

Macromolecule Entities
Molecule Chains Length Organism Details
OROTIDINE 5'-PHOSPHATE DECARBOXYLASE A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, PA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P 245 Escherichia coli EC#: 4.1.1.23 IUBMB
Mutation: M1M, M49M, M95M, M106M, M107M, M133M, M143M, M205M, M218M
Gene Name(s): pyrF b1281 JW1273
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BMP
Query on BMP

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P 6-HYDROXYURIDINE-5'-PHOSPHATE
C9 H13 N2 O10 P
UDOBICLZEKUKCV-YXZULKJRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BMP N/A in BindingDB
N/A in BindingMoad
Ki: 0.0088 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.344
  • R-Value Work: 0.344
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 115.50 α = 90.00
b = 149.00 β = 115.30
c = 115.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-06
  • Released Date: 2001-08-01
  • Deposition author(s): Poulsen, J.-C.N., Harris, P., Jensen, K.F., Larsen, S.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance