1JID

Human SRP19 in complex with helix 6 of Human SRP RNA

Structural Biology Knowledgebase: 1JID SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1JID

Classification: SIGNALING PROTEIN / RNA

Total Structure Weight: 24468.30


Macromolecule Entities
Molecule Chains Length Organism Details
SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN A 128 Homo sapiens Fragment: 24 C-TERMINAL RESIDUES TRUNCATED
Gene Name(s): SRP19 Gene View
Macromolecule Entities
Molecule Chains Length Organism Details
HELIX 6 OF HUMAN SRP RNA B 29 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
5BU
Query on 5BU
B RNA LINKING C9 H12 Br N2 O9 P U
A23
Query on A23
B RNA LINKING C10 H13 N5 O9 P2 A

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.186
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.81 α = 90.00
b = 109.78 β = 90.00
c = 89.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-02
  • Released Date: 2001-10-19
  • Deposition author(s): Wild, K., Sinning, I., Cusack, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4