1JHY

Three-dimensional Structure of CobT in Complex with Phenol and Nicotinate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 1JHY

Classification: TRANSFERASE

Total Structure Weight: 36987.79

Macromolecule Entities
Molecule Chains Length Organism Details
Nicotinate Mononucleotide:5,6-Dimethylbenzimidazole Phosphoribosyltransferase A 356 Salmonella enterica EC#: 2.4.2.21 IUBMB
Mutation: A159T
Gene Name(s): cobT STM2016
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NIO
Query on NIO

A NICOTINIC ACID
C6 H5 N O2
PVNIIMVLHYAWGP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPH
Query on IPH

A PHENOL
C6 H6 O
ISWSIDIOOBJBQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.175
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 71.82 α = 90.00
b = 89.99 β = 90.00
c = 47.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-28
  • Released Date: 2001-10-18
  • Deposition author(s): Cheong, C.G., Escalante-Semerena, J., Rayment, I.

Revision History

  • Version 1_0: 2001-10-18

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance