1JGD

HLA-B*2709 bound to deca-peptide s10R

Structural Biology Knowledgebase: 1JGD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 1JGD

Classification: IMMUNE SYSTEM

Total Structure Weight: 45239.59

Macromolecule Entities
Molecule Chains Length Organism Details
HUMAN LYMPHOCYTE ANTIGEN HLA-B27 A 276 Homo sapiens Gene Name(s): HLA-B Gene View HLAB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BETA-2-MICROGLOBULIN B 100 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
peptide s10R C 10 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.169
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 129.84 α = 90.00
b = 48.44 β = 121.29
c = 88.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-25
  • Released Date: 2003-07-01
  • Deposition author(s): Hillig, R.C., Huelsmeyer, M., Saenger, W., Volz, A., Uchanska-Ziegler, B., Ziegler, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update