1JFP

Structure of bovine rhodopsin (dark adapted)


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 3
  • Conformers Submitted: 1
  • Selection Criteria: Target Function

Literature

Macromolecules
Sequence Display for 1JFP

Classification: SIGNALING PROTEIN MEMBRANE PROTEIN

Total Structure Weight: 39316.25

Macromolecule Entities
Molecule Chains Length Organism Details
rhodopsin A 348 Bos taurus Gene Name(s): RHO Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: ALPHA-HELICAL

Subgroup Name: G Protein-Coupled Receptors (GPCRs)

Protein Name: Rhodopsin


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RET
Query on RET

A RETINAL
C20 H28 O
NCYCYZXNIZJOKI-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 3
  • Conformers Submitted: 1
  • Selection Criteria: target function

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-21
  • Released Date: 2001-10-05
  • Deposition author(s): Yeagle, P.L., Choi, G., Albert, A.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4