Crystal Structure of a Copper-Mediated Base Pair in DNA
DOI:10.2210/pdb1jes/pdb   NDB ID: ZD0006
1JES
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7423.89
    Molecule: 5'-D(*CP*GP*CP*GP*(DPY)P*AP*TP*(DRP)P*CP*GP*CP*G)-3'
    Polymer: 1 Type: dna Length: 12
    Chains: A, B
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1BNA   structure of 5'-(CpGpCpGpApApTpTpCpGpCpG)-3' 
    2ZNA   theoretical model of Z(I)-DNA 
    3ZNA   theoretical model of Z(II)-DNA 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CU
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    CU Cu
    COPPER (II) ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    DPY
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    DPY C12 H14 N O10 P dnaLinking
    DRP
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    DRP C10 H14 N O6 P dnaLinking
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:ZD0006
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Atwell, S.,  Meggers, E.,  Spraggon, G.,  Schultz, P.G.

    Deposition:   2001-06-18
    Release:   2001-11-23
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.50
    R-Value: 0.169 (work)
    R-Free: 0.202
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 25.34 α = 90.00 
    b = 34.36 β = 101.13 
    c = 31.09 γ = 90.00