1JES

Crystal Structure of a Copper-Mediated Base Pair in DNA

Structural Biology Knowledgebase: 1JES SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.169

Literature

Macromolecules
Sequence Display for 1JES

Classification: DNA

Total Structure Weight: 7423.89

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*CP*GP*(DPY)P*AP*TP*(DRP)P*CP*GP*CP*G)-3' A, B 12 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CU
Query on CU

A, B COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
DPY
Query on DPY
A, B DNA LINKING C12 H14 N O10 P --
DRP
Query on DRP
A, B DNA LINKING C10 H14 N O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.169
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 25.34 α = 90.00
b = 34.36 β = 101.13
c = 31.09 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2001-06-18
  • Released Date: 2001-11-23
  • Deposition author(s): Atwell, S., Meggers, E., Spraggon, G., Schultz, P.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4