1JDX

CRYSTAL STRUCTURE OF HUMAN L-ARGININE:GLYCINE AMIDINOTRANSFERASE IN COMPLEX WITH L-NORVALINE

Structural Biology Knowledgebase: 1JDX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.177

Literature

Macromolecules
Sequence Display for 1JDX

Classification: TRANSFERASE

Total Structure Weight: 44459.12

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (L-ARGININE:GLYCINE AMIDINOTRANSFERASE) A 386 Homo sapiens EC#: 2.1.4.1 IUBMB
Fragment: RESIDUES 38 - 423
Gene Name(s): GATM Gene View AGAT
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NVA
Query on NVA

A NORVALINE
C5 H11 N O2
SNDPXSYFESPGGJ-BYPYZUCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.177
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 83.80 α = 90.00
b = 83.80 β = 90.00
c = 199.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-10-12
  • Released Date: 1999-02-09
  • Deposition author(s): Fritsche, E., Humm, A., Huber, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4