1JDP

Crystal Structure of Hormone/Receptor Complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.227

Literature

Macromolecules
Sequence Display for 1JDP

Classification: SIGNALING PROTEIN

Total Structure Weight: 102446.18

Macromolecule Entities
Molecule Chains Length Organism Details
ATRIAL NATRIURETIC PEPTIDE CLEARANCE RECEPTOR A, B 441 Homo sapiens Gene Name(s): NPR3 Gene View ANPRC C5orf23 NPRC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
C-TYPE NATRIURETIC PEPTIDE H 22 Homo sapiens Gene Name(s): NPPC Gene View CNP2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDG
Query on NDG

A 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
C8 H15 N O6
OVRNDRQMDRJTHS-PVFLNQBWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.227
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.80 α = 90.00
b = 136.46 β = 90.00
c = 137.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-14
  • Released Date: 2001-09-05
  • Deposition author(s): He, X.-L., Chow, D.-C., Martick, M.M., Garcia, K.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update