The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation
DOI:10.2210/pdb1jb8/pdb   NDB ID: AH0019
1JB8
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA/RNA
    Structure Weight: 6247.09
    Molecule: 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'
    Polymer: 1 Type: rna Length: 10
    Chains: A
    Details: RNA/DNA hybrid of PPT sequence of HIV
    Molecule: 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'
    Polymer: 2 Type: dna Length: 10
    Chains: B
    Details: RNA/DNA hybrid of PPT sequence of HIV
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:AH0019
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Han, G.W.,  Kopka, M.L.,  Langs, D.,  Dickerson, R.E.

    Deposition:   2001-06-02
    Release:   2003-07-01
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.38
    R-Value: 0.223 (work)
    R-Free: 0.251
    Space Group: I 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 45.23 α = 90.00 
    b = 46.78 β = 90.00 
    c = 56.56 γ = 90.00