1JB8

The Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation

Structural Biology Knowledgebase: 1JB8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.223

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1JB8

Classification: DNA / RNA

Total Structure Weight: 6247.09

Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' A 10 synthetic RNA/DNA hybrid of PPT sequence of HIV
5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3' B 10 synthetic RNA/DNA hybrid of PPT sequence of HIV


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.223
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.23 α = 90.00
b = 46.78 β = 90.00
c = 56.56 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2001-06-02
  • Released Date: 2003-07-01
  • Deposition author(s): Han, G.W., Kopka, M.L., Langs, D., Dickerson, R.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4