1J78

Crystallographic analysis of the human vitamin D binding protein

Structural Biology Knowledgebase: 1J78 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1J78

Classification: TRANSPORT LIGAND BINDING PROTEIN

Total Structure Weight: 103803.64

Macromolecule Entities
Molecule Chains Length Organism Details
vitamin D binding protein A, B 458 Homo sapiens Mutation: K420T
Gene Name(s): GC Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
OLA
Query on OLA

A, B OLEIC ACID
C18 H34 O2
ZQPPMHVWECSIRJ-KTKRTIGZSA-N
Ligand Explorer
 
JSmol
VDY
Query on VDY

B 3-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A- METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}- 4-METHYLENE-CYCLOHEXANOL
25-HYDROXYVITAMIN D3 (Synonym)
C27 H44 O2
JWUBBDSIWDLEOM-DTOXIADCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.220
  • Space Group: P 43
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 132.25 α = 90.00
b = 132.25 β = 90.00
c = 73.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-16
  • Released Date: 2002-02-06
  • Deposition author(s): Verboven, C., Rabijns, A., De Maeyer, M., Van Baelen, H., Bouillon, R., De Ranter, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4