1J5Y

Crystal structure of transcriptional regulator (TM1602) from Thermotoga maritima at 2.3 A resolution

Structural Biology Knowledgebase: 1J5Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1J5Y

Classification: TRANSCRIPTION

Total Structure Weight: 21471.69

Macromolecule Entities
Molecule Chains Length Organism Details
TRANSCRIPTIONAL REGULATOR, BIOTIN REPRESSOR FAMILY A 187 Thermotoga maritima Mutation: M1M, M3M, M130M, M132M, M158M, M162M
Gene Name(s): niaR TM_1602
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 90.96 α = 90.00
b = 90.96 β = 90.00
c = 90.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-05
  • Released Date: 2002-07-31
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values