1J5A

STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTER IN EUBACTERIA

Structural Biology Knowledgebase: 1J5A SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.323
  • R-Value Work: 0.273

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1J5A

Classification: RIBOSOME

Total Structure Weight: 978511.93


Macromolecule Entities
Molecule Chains Length Organism Details
RIBOSOMAL PROTEIN L4 K 205 Deinococcus radiodurans Gene Name(s): rplD DR_0312
RIBOSOMAL PROTEIN L22 L 134 Deinococcus radiodurans Gene Name(s): rplV DR_0316
RIBOSOMAL PROTEIN L32 M 60 Deinococcus radiodurans Gene Name(s): rpmF DR_2366
Macromolecule Entities
Molecule Chains Length Organism Details
23S RRNA A 2880 Deinococcus radiodurans

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CTY
Query on CTY

A CLARITHROMYCIN
C38 H69 N O13
AGOYDEPGAOXOCK-KCBOHYOISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.323
  • R-Value Work: 0.273
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 169.90 α = 90.00
b = 412.70 β = 90.00
c = 697.00 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2002-03-06
  • Released Date: 2002-03-08
  • Deposition author(s): Schluenzen, F., Zarivach, R., Harms, J., Bashan, A., Tocilj, A., Albrecht, R., Yonath, A., Franceschi, F.
  • Previous versions: 1K00

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4