1J2J

Crystal structure of GGA1 GAT N-terminal region in complex with ARF1 GTP form

Structural Biology Knowledgebase: 1J2J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1J2J

Classification: PROTEIN TRANSPORT

Total Structure Weight: 25121.35

Macromolecule Entities
Molecule Chains Length Organism Details
ADP-ribosylation factor 1 A 166 Mus musculus Fragment: residues 18-181
Mutation: Q71L
Gene Name(s): Arf2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ADP-ribosylation factor binding protein GGA1 B 45 Homo sapiens Fragment: GAT N-terminal region
Gene Name(s): GGA1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IOD
Query on IOD

A, B IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.198
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 49.41 α = 90.00
b = 61.89 β = 90.00
c = 76.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-05
  • Released Date: 2003-05-06
  • Deposition author(s): Shiba, T., Kawasaki, M., Takatsu, H., Nogi, T., Matsugaki, N., Igarashi, N., Suzuki, M., Kato, R., Nakayama, K., Wakatsuki, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4