1J1W

Crystal Structure Of The Monomeric Isocitrate Dehydrogenase In Complex With NADP+

Structural Biology Knowledgebase: 1J1W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.260

Literature

Macromolecules
Sequence Display for 1J1W

Classification: oxidoreductase

Total Structure Weight: 325007.03

Macromolecule Entities
Molecule Chains Length Organism Details
Isocitrate Dehydrogenase A, B, C, D 741 Azotobacter vinelandii EC#: 1.1.1.42 IUBMB 1.2.1.8 IUBMB
Mutation: I727M
Gene Name(s): icd
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B, C, D NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.260
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 113.50 α = 90.00
b = 110.41 β = 90.16
c = 133.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-19
  • Released Date: 2003-09-23
  • Deposition author(s): Yasutake, Y., Watanabe, S., Yao, M., Takada, Y., Fukunaga, N., Tanaka, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4