1J0X

Crystal structure of the rabbit muscle glyceraldehyde-3-phosphate dehydrogenase (GAPDH)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 1J0X

Classification: OXIDOREDUCTASE

Total Structure Weight: 144349.91

Macromolecule Entities
Molecule Chains Length Organism Details
glyceraldehyde-3-phosphate dehydrogenase O, P, Q, R 332 Oryctolagus cuniculus EC#: 1.2.1.12 IUBMB
Mutation: X123A, C149X, A286D
Gene Name(s): GAPDH Gene View GAPD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

P, R NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NAD N/A in BindingDB
Kd: 10 nM  BindingMOAD
N/A in PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSX
Query on CSX
O, P, Q, R L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.203
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 81.70 α = 90.00
b = 98.50 β = 90.00
c = 183.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-25
  • Released Date: 2003-12-09
  • Deposition author(s): Cowan-Jacob, S.W., Kaufmann, M., Anselmo, A.N., Stark, W., Grutter, M.G.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance