1IXX

CRYSTAL STRUCTURE OF COAGULATION FACTORS IX/X-BINDING PROTEIN (IX/X-BP) FROM VENOM OF HABU SNAKE WITH A HETERODIMER OF C-TYPE LECTIN DOMAINS

Structural Biology Knowledgebase: 1IXX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1IXX

Classification: COAGULATION FACTOR BINDING

Total Structure Weight: 88142.85

Macromolecule Entities
Molecule Chains Length Organism Details
COAGULATION FACTORS IX/X-BINDING PROTEIN A, C, E 129 Protobothrops flavoviridis Fragment: C-TYPE LECTIN DOMAIN
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
COAGULATION FACTORS IX/X-BINDING PROTEIN B, D, F 123 Protobothrops flavoviridis Fragment: C-TYPE LECTIN DOMAIN
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B, C, D, E, F CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.178
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 172.20 α = 90.00
b = 85.70 β = 90.00
c = 65.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-05-01
  • Released Date: 1998-05-06
  • Deposition author(s): Mizuno, H., Fujimoto, Z., Koizumi, M., Kano, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values