1IXS

Structure of RuvB complexed with RuvA domain III

Structural Biology Knowledgebase: 1IXS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 1IXS

Classification: Hydrolase

Total Structure Weight: 42623.47

Macromolecule Entities
Molecule Chains Length Organism Details
Holliday junction DNA helicase ruvA A 62 Thermus thermophilus EC#: 3.6.4.12 IUBMB
Fragment: RuvA domain III
Gene Name(s): ruvA TTHA0291
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RuvB B 318 Thermus thermophilus EC#: 3.6.4.12 IUBMB
Fragment: residues 1-318
Gene Name(s): ruvB TTHA0406
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

B PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.294
  • R-Value Work: 0.231
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.06 α = 90.00
b = 102.06 β = 90.00
c = 137.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-04
  • Released Date: 2002-11-06
  • Deposition author(s): Yamada, K., Miyata, T., Tsuchiya, D., Oyama, T., Fujiwara, Y., Ohnishi, T., Iwasaki, H., Shinagawa, H., Ariyoshi, M., Mayanagi, K., Morikawa, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4