1IXJ

Crystal Structure of d(GCGAAAGCT) Containing Parallel-stranded Duplex with Homo Base Pairs and Anti-Parallel Duplex with Watson-Crick Base pairs

Structural Biology Knowledgebase: 1IXJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 1IXJ

Classification: DNA

Total Structure Weight: 2974.58

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*CP*GP*AP*AP*AP*GP*CP*T)-3' A 9 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NCO
Query on NCO

A COBALT HEXAMMINE(III)
Co H18 N6
DYLMFCCYOUSRTK-FGTKAUEHAT
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.215
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 53.40 α = 90.00
b = 53.40 β = 90.00
c = 54.00 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2002-06-22
  • Released Date: 2002-12-11
  • Deposition author(s): Sunami, T., Kondo, J., Kobuna, T., Hirao, I., Watanabe, K., Miura, K., Takenaka, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4