1IVJ

Crystal Structure of Rat Hemeoxygenase-1 in Complex with Heme and Azide.

Structural Biology Knowledgebase: 1IVJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 1IVJ

Classification: OXIDOREDUCTASE

Total Structure Weight: 31313.29

Macromolecule Entities
Molecule Chains Length Organism Details
Hemeoxygenase-1 A 267 Rattus norvegicus EC#: 1.14.14.18 IUBMB 4.1.3.30 IUBMB
Fragment: TRANS-MEMBRANE REGION
Gene Name(s): Hmox1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AZI
Query on AZI

A AZIDE ION
N3
IVRMZWNICZWHMI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.189
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.01 α = 90.00
b = 65.01 β = 90.00
c = 120.25 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-18
  • Released Date: 2002-12-11
  • Deposition author(s): Sugishima, M., Sakamoto, H., Omata, Y., Hayashi, S., Noguchi, M., Fukuyama, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4