1IR6

Crystal structure of exonuclease RecJ bound to manganese

Structural Biology Knowledgebase: 1IR6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 1IR6

Classification: HYDROLASE

Total Structure Weight: 45952.43

Macromolecule Entities
Molecule Chains Length Organism Details
exonuclease RecJ A 424 Thermus thermophilus EC#: 3.1 IUBMB
Fragment: catalytic domain
Mutation: S168P, V191A
Gene Name(s): recJ TTHA1167
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.228
  • Space Group: P 21 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 141.60 α = 90.00
b = 141.60 β = 90.00
c = 141.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-11
  • Released Date: 2002-05-15
  • Deposition author(s): Yamagata, A., Kakuta, Y., Masui, R., Fukuyama, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4