1IPF

TROPINONE REDUCTASE-II COMPLEXED WITH NADPH AND TROPINONE

Structural Biology Knowledgebase: 1IPF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 1IPF

Classification: OXIDOREDUCTASE

Total Structure Weight: 58186.04

Macromolecule Entities
Molecule Chains Length Organism Details
TROPINONE REDUCTASE-II A, B 259 Datura stramonium EC#: 1.1.1.236 IUBMB
Gene Name(s): TR2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TNE
Query on TNE

A, B 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE
TROPINONE (Synonym)
C8 H13 N O
QQXLDOJGLXJCSE-KNVOCYPGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.197
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 88.60 α = 90.00
b = 88.60 β = 90.00
c = 337.20 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-09
  • Released Date: 2003-06-03
  • Deposition author(s): Yamashita, A., Endo, M., Higashi, T., Nakatsu, T., Yamada, Y., Oda, J., Kato, H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4