Solution Structure of the Methyl-CpG-Binding Domain of Human MBD1 in Complex with Methylated DNA
DOI:10.2210/pdb1ig4/pdb   NDB ID: 1IG4
Primary Citation
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 15869.73
    Molecule: 5'-D(*GP*TP*AP*TP*CP*(5CM)P*GP*GP*AP*TP*AP*C)-3'
    Polymer: 1 Type: dna Length: 12
    Chains: B, C
    Molecule: Methyl-CpG Binding Protein
    Polymer: 2 Type: protein Length: 75
    Chains: A
    Fragment: Methyl-CpG-binding domain
    Organism: Homo sapiens
    Gene Names: CXXC3 Gene View for MBD1 Gene View for PCM1
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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5CM C10 H16 N3 O7 P DC dnaLinking
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:1IG4
Data in orange boxes are gathered from external resources (when available).
Structure Image
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  •   Deposition Summary Hide
    Authors:   Ohki, I.,  Shimotake, N.,  Fujita, N.,  Jee, J.-G.,  Ikegami, T.,  Nakao, M.,  Shirakawa, M.

    Deposition:   2001-04-17
    Release:   2001-05-30
    Last Modified (REVDAT):   2009-02-24
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  •   Experimental Details Hide
    Method:   SOLUTION NMR
    Exp. Data:
    NMR Ensemble
    Conformers Calculated:     200
    Conformers Submitted:     20
    Selection Criteria: structures with the lowest energy
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    Method: SOLUTION NMR