NMR Ensemble

1IG4

Solution Structure of the Methyl-CpG-Binding Domain of Human MBD1 in Complex with Methylated DNA

Structural Biology Knowledgebase: 1IG4 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Lowest Energy

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1IG4

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 15869.73


Macromolecule Entities
Molecule Chains Length Organism Details
Methyl-CpG Binding Protein A 75 Homo sapiens Fragment: Methyl-CpG-binding domain
Gene Name(s): MBD1 Gene View CXXC3 PCM1 Gene View
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*TP*AP*TP*CP*(5CM)P*GP*GP*AP*TP*AP*C)-3' B, C 12 synthetic

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5CM
Query on 5CM
B, C DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 20
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-17
  • Released Date: 2001-05-30
  • Deposition author(s): Ohki, I., Shimotake, N., Fujita, N., Jee, J.-G., Ikegami, T., Nakao, M., Shirakawa, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4