1I72

HUMAN S-ADENOSYLMETHIONINE DECARBOXYLASE WITH COVALENTLY BOUND PYRUVOYL GROUP AND COVALENTLY BOUND 5'-DEOXY-5'-[N-METHYL-N-(2-AMINOOXYETHYL) AMINO]ADENOSINE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1I72

Classification: LYASE

Total Structure Weight: 38794.30

Macromolecule Entities
Molecule Chains Length Organism Details
S-ADENOSYLMETHIONINE DECARBOXYLASE BETA CHAIN B 67 Homo sapiens EC#: 4.1.1.50 IUBMB
Gene Name(s): AMD1 Gene View AMD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
S-ADENOSYLMETHIONINE DECARBOXYLASE ALPHA CHAIN A 267 Homo sapiens EC#: 4.1.1.50 IUBMB
Mutation: S68X
Gene Name(s): AMD1 Gene View AMD

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MAO
Query on MAO

A 5'-DEOXY-5'-[N-METHYL-N-(2-AMINOOXYETHYL) AMINO]ADENOSINE
C13 H21 N7 O4
PPIPUCUVJJZYEK-QYVSTXNMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PUT
Query on PUT

A 1,4-DIAMINOBUTANE
PUTRESCINE (Synonym)
C4 H12 N2
KIDHWZJUCRJVML-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MAO IC50: 55 nM (99) BindingDB

N/A in BindingMoad
IC50: 55 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PYR
Query on PYR
A NON-POLYMER C3 H4 O3 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.201
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 100.47 α = 90.00
b = 50.83 β = 105.28
c = 68.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-03-07
  • Released Date: 2001-08-22
  • Deposition author(s): Tolbert, W.D., Ekstrom, J.L., Mathews, I.I., Secrist III, J.A., Pegg, A.E., Ealick, S.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4